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1

Draft Genome Sequence of an Erwinia tracheiphila Isolate from an Infected Muskmelon ( Cucumis melo )

Shapiro, Lori R., Andrade, Andres, Scully, Erin D., Rocha, Jorge, Paulson, Joseph N., Kolter, Roberto, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 129 KB

english, 2018

2

Lateral gene transfer between prokaryotes and eukaryotes

Sieber, Karsten B., Bromley, Robin E., Dunning Hotopp, Julie C.

Journal:

Experimental Cell Research

Année:

2017

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2017

3

Draft Genome Sequence of a Streptomycete Isolated from Potato Common Scab Lesions in the State of Sinaloa, Mexico

Alejo-Viderique, Amanda, Contreras-Castro, Luis, Félix-Gastélum, Rubén, Maldonado, Luis A., Quintana, Erika T., Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 113 KB

english, 2018

4

Multispecies Transcriptomics Data Set of Brugia malayi , Its Wolbachia Endosymbiont w Bm, and Aedes aegypti across the B. malayi Life Cycle

Chung, Matthew, Teigen, Laura, Libro, Silvia, Bromley, Robin E., Kumar, Nikhil, Sadzewicz, Lisa, Tallon, Luke J., Foster, Jeremy M., Michalski, Michelle L., Dunning Hotopp, Julie C., Newton, Irene L.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 187 KB

english, 2018

5

Whole-Genome Sequences of Two Pseudomonas fluorescens Strains Isolated from Roots of Tomato and Cucumber Plants

Sevigny, Joseph L., LaJoie, Jessica, Shehata, Shania, Christensen, Elijah, Cornfield, Scott, Koziol, Lori, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 112 KB

english, 2018

6

Complete Genome Sequence of Leptospira kmetyi LS 001/16, Isolated from a Soil Sample Associated with a Leptospirosis Patient in Kelantan, Malaysia

Yusof, Nik Yusnoraini, Muhammad Yusoff, Farhana, Muhammad Harish, Salwani, Ahmad, Muhammad Nuramin, Khalid, Muhammad Fazli, Mohd Nor, Fauziah, Ismail, Nabilah, Aziah, Ismail, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2019

Langue:

english

Fichier:

PDF, 127 KB

english, 2019

7

Draft Whole-Genome Sequences of Two Western European Borrelia miyamotoi Isolates

Kuleshov, Konstantin V., Hoornstra, Dieuwertje, Sprong, Hein, Platonov, Alexander E., Hovius, Joppe W., Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2019

Fichier:

PDF, 568 KB

2019

8

Complete Chromosomal Sequences of Two Borrelia miyamotoi Samples Obtained from Ixodes ricinus Eggs in Czechia

JaneÄek, Jan, NovÃ¡kovÃ¡, MarkÃ©ta, Oppelt, Jan, PospÃÅ¡ilovÃ¡, Petra, Cunha, Anita, Silva, Ana Catarina, Dantong, Li, Å majs, David, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2020

Fichier:

PDF, 155 KB

2020

9

Whole-Genome Sequences of Three Plant Growth-Promoting Rhizobacteria Isolated from Solanum tuberosum L. Rhizosphere in Tanzania

Aloo, Becky N., Mbega, Ernest R., Makumba, Billy A., Friedrich, Ines, Hertel, Robert, Daniel, Rolf, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2020

Fichier:

PDF, 162 KB

2020

10

Draft Whole-Genome Sequence of the Anthracene-Degrading Strain Mycolicibacterium frederiksbergense LB501T, Isolated from a Polycyclic Aromatic Hydrocarbon-Contaminated Soil

Augelletti, Floriana, Tremblay, Julien, Agathos, Spiros N., Jousset, Alexandre, Stenuit, Ben, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2020

Fichier:

PDF, 229 KB

2020

11

Intrinsic tryptophan fluorescence as a probe of metal and α-ketoglutarate binding to TfdA, a mononuclear non-heme iron dioxygenase

Julie C. Dunning Hotopp, Thomas A. Auchtung, Deborah A. Hogan, Robert P. Hausinger

Journal:

Journal of Inorganic Biochemistry

Année:

2003

Langue:

english

Fichier:

PDF, 314 KB

english, 2003

12

Improving pan-genome annotation using whole genome multiple alignment

Samuel V Angiuoli, Julie C Dunning Hotopp, Steven L Salzberg, Hervé Tettelin

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2011

13

Horizontal gene transfer between bacteria and animals

Julie C. Dunning Hotopp

Journal:

Trends in Genetics

Année:

2011

Langue:

english

Fichier:

PDF, 298 KB

english, 2011

14

Alternative substrates of 2,4-dichlorophenoxyacetate/α-ketoglutarate dioxygenase

Julie C. Dunning Hotopp, Robert P. Hausinger

Journal:

Journal of Molecular Catalysis B: Enzymatic

Année:

2001

Langue:

english

Fichier:

PDF, 116 KB

english, 2001

15

New criteria for selecting the origin of DNA replication inWolbachiaand closely related bacteria

Panagiotis Ioannidis, Julie C Dunning Hotopp, Panagiotis Sapountzis, Stefanos Siozios, Georgios Tsiamis, Seth R Bordenstein, Laura Baldo, John H Werren, Kostas Bourtzis

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 914 KB

english, 2007

16

Efficient subtraction of insect rRNA prior to transcriptome analysis ofWolbachia-Drosophilalateral gene transfer

Nikhil Kumar, Todd Creasy, Yezhou Sun, Melissa Flowers, Luke J Tallon, Julie C Dunning Hotopp

Journal:

BMC Research Notes

Année:

2012

Langue:

english

Fichier:

PDF, 289 KB

english, 2012

17

Phenotypic, genomic, and transcriptional characterization ofStreptococcus pneumoniaeinteracting with human pharyngeal cells

Sheila Z Kimaro Mlacha, Sandra Romero-Steiner, Julie C Dunning Hotopp…

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2013

18

Serendipitous discovery ofWolbachiagenomes in multipleDrosophilaspecies

Steven L Salzberg, Julie C Dunning Hotopp, Arthur L Delcher, Mihai Pop…

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 608 KB

english, 2005

19

Correction: Serendipitous discovery ofWolbachiagenomes in multipleDrosophilaspecies

Steven L Salzberg, Julie C Dunning Hotopp, Arthur L Delcher, Mihai Pop…

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 48 KB

english, 2005

20

Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterialWolbachiaendosymbiont to its host filarial nematodeBrugia malayi

Ioannidis, Panagiotis, Johnston, Kelly L, Riley, David R, Kumar, Nikhil, White, James R, Olarte, Karen T, Ott, Sandra, Tallon, Luke J, Foster, Jeremy M, Taylor, Mark J, Dunning Hotopp, Julie C

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2013

21

Mobile elements and viral integrations prompt considerations for bacterial DNA integration as a novel carcinogen

Robinson, Kelly M., Dunning Hotopp, Julie C.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 740 KB

english, 2014

22

X-ray Crystal Structure of Escherichia coli Taurine/α-Ketoglutarate Dioxygenase Complexed to Ferrous Iron and Substrates †,‡

Elkins, Jonathan M., Ryle, Matthew J., Clifton, Ian J., Dunning Hotopp, Julie C., Lloyd, John S., Burzlaff, Nicolai I., Baldwin, Jack E., Hausinger, Robert P., Roach, Peter L.

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 444 KB

english, 2002

23

Probing the 2,4-Dichlorophenoxyacetate/α-Ketoglutarate Dioxygenase Substrate-Binding Site by Site-Directed Mutagenesis and Mechanism-Based Inactivation †

Dunning Hotopp, Julie C., Hausinger, Robert P.

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 107 KB

english, 2002

24

Biology Wars: The Eukaryotes Strike Back

Dunning Hotopp, Julie C., Estes, Anne M.

Journal:

Cell Host & Microbe

Année:

2014

Langue:

english

Fichier:

PDF, 323 KB

english, 2014

25

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

Desjardins, Christopher A, Cerqueira, Gustavo C, Goldberg, Jonathan M, Hotopp, Julie C Dunning, Haas, Brian J, Zucker, Jeremy, Ribeiro, José M C, Saif, Sakina, Levin, Joshua Z, Fan, Lin, Zeng, Qiandon

Journal:

Nature Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 3.45 MB

english, 2013

26

Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae

Klasson, Lisa, Kumar, Nikhil, Bromley, Robin, Sieber, Karsten, Flowers, Melissa, Ott, Sandra H, Tallon, Luke J, Andersson, Siv G E, Dunning Hotopp, Julie C

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 9.31 MB

english, 2014

27

Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis

Tallon, Luke J, Liu, Xinyue, Bennuru, Sasisekhar, Chibucos, Marcus C, Godinez, Alvaro, Ott, Sandra, Zhao, Xuechu, Sadzewicz, Lisa, Fraser, Claire M, Nutman, Thomas B, Dunning Hotopp, Julie C

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2014

28

Comparative Genomics of Emerging Human Ehrlichiosis Agents

Dunning Hotopp, Julie C., Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V., Eisen, Jonathan, Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R., Smith, Shannon, Lewis,

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 751 KB

english, 2006

29

A Review of Bacteria-Animal Lateral Gene Transfer May Inform Our Understanding of Diseases like Cancer

Robinson, Kelly M., Sieber, Karsten B., Dunning Hotopp, Julie C., Matic, Ivan

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2013

30

Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples

Riley, David R., Sieber, Karsten B., Robinson, Kelly M., White, James Robert, Ganesan, Ashwinkumar, Nourbakhsh, Syrus, Dunning Hotopp, Julie C., Eisen, Jonathan A.

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2013

31

Genomic Epidemiology of Hypervirulent Serogroup W, ST-11 Neisseria meningitidis

Mustapha, Mustapha M., Marsh, Jane W., Krauland, Mary G., Fernandez, Jorge O., de Lemos, Ana Paula S., Dunning Hotopp, Julie C., Wang, Xin, Mayer, Leonard W., Lawrence, Jeffrey G., Hiller, N. Luisa, H

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1.11 MB

english, 2015

32

Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination

Sonia Budroni, Emilio Siena, Julie C. Dunning Hotopp, Kate L. Seib, Davide Serruto, Chiara Nofroni, Maurizio Comanducci, David R. Riley, Sean C. Daugherty, Samuel V. Angiuoli, Antonello Covacci, Maria

Journal:

Proceedings of the National Academy of Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 1.67 MB

english, 2011

33

Modeling the integration of bacterial rRNA fragments into the human cancer genome

Sieber, Karsten B., Gajer, Pawel, Dunning Hotopp, Julie C.

Journal:

BMC Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 884 KB

english, 2016

34

Genomic Investigation Reveals Highly Conserved, Mosaic, Recombination Events Associated with Capsular Switching among Invasive Neisseria meningitidis Serogroup W Sequence Type (ST) - 11 Strains.

Mustapha, Mustapha M., Marsh, Jane W., Krauland, Mary G., Fernandez, Jorge O., de Lemos, Ana Paula S., Dunning Hotopp, Julie C., Wang, Xin, Mayer, Leonard W., Lawrence, Jeffrey G., Hiller, N. Luisa, H

Journal:

Genome Biology and Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 2.32 MB

english, 2016

35

The genome of Onchocerca volvulus, agent of river blindness

Cotton, James A., Bennuru, Sasisekhar, Grote, Alexandra, Harsha, Bhavana, Tracey, Alan, Beech, Robin, Doyle, Stephen R., Dunn, Matthew, Hotopp, Julie C. Dunning, Holroyd, Nancy, Kikuchi, Taisei, Lambe

Journal:

Nature Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 3.12 MB

english, 2016

36

Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples

Kumar, Nikhil, Lin, Mingqun, Zhao, Xuechu, Ott, Sandra, Santana-Cruz, Ivette, Daugherty, Sean, Rikihisa, Yasuko, Sadzewicz, Lisa, Tallon, Luke J., Fraser, Claire M., Dunning Hotopp, Julie C.

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 758 KB

english, 2016

37

Targeted Enrichment and Sequencing of Recent Endosymbiont-Host Lateral Gene Transfers

Dunning Hotopp, Julie C., Slatko, Barton E., Foster, Jeremy M.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 1.94 MB

english, 2017

38

Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb

Chung, Matthew, Small, Scott T, Serre, David, Zimmerman, Peter A, Dunning Hotopp, Julie C

Journal:

Pathogens and Disease

Année:

2017

Langue:

english

Fichier:

PDF, 2.15 MB

english, 2017

39

The Complexities and Nuances of Analyzing the Genome of Drosophila ananassae and Its Wolbachia Endosymbiont

Dunning Hotopp, Julie C., Klasson, Lisa

Journal:

G3 Genes|Genome|Genetics

Année:

2018

Langue:

english

Fichier:

PDF, 503 KB

english, 2018

40

In Vivo -Selected Compensatory Mutations Restore the Fitness Cost of Mosaic penA Alleles That Confer Ceftriaxone Resistance in Neisseria gonorrhoeae

Vincent, Leah R., Kerr, Samuel R., Tan, Yang, Tomberg, Joshua, Raterman, Erica L., Dunning Hotopp, Julie C., Unemo, Magnus, Nicholas, Robert A., Jerse, Ann E., Gilmore, Michael S.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 653 KB

english, 2018

41

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

Dunning Hotopp, Julie C., Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V., Eisen, Jonathan A., Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R., Smith, Shannon, Lew

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 33 KB

english, 2006

42

Draft Genome Sequence of Bacillus sp. Strain YSP-3, a Halophilic, Alkaliphilic Bacterium Isolated from a Salt Lake

Wang, Shuangyan, Dong, Luna, Zhao, Baisuo, Xu, Shuxia, Wu, Kun, Wang, Haisheng, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Fichier:

PDF, 115 KB

2018

43

Isolation of a divergent strain of Rickettsia japonica from Dew's Australian bat Argasid ticks (Argas (Carios) dewae) in Victoria, Australia

Izzard, Leonard, Chung, Matthew, Dunning Hotopp, Julie, Vincent, Gemma, Paris, Daniel, Graves, Stephen, Stenos, John

Journal:

Ticks and Tick-borne Diseases

Année:

2018

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2018

44

Grafting or pruning in the animal tree: lateral gene transfer and gene loss?

Dunning Hotopp, Julie C.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2018

45

Draft Genome Sequence of Bacillus sp. Strain YSP-3, a Halophilic, Alkaliphilic Bacterium Isolated from a Salt Lake

Wang, Shuangyan, Dong, Luna, Zhao, Baisuo, Xu, Shuxia, Wu, Kun, Wang, Haisheng, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 115 KB

english, 2018

46

Complete Genome Sequence of the Industrial Fast-Acidifying Strain Streptococcus thermophilus N4L

Proust, Lucas, Loux, Valentin, Martin, Véronique, Magnabosco, Cristian, Pedersen, Martin, Monnet, Véronique, Juillard, Vincent, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 113 KB

english, 2018

47

Draft Genome Sequence of Erwinia dacicola , a Dominant Endosymbiont of Olive Flies

Estes, Anne M., Hearn, David J., Nadendla, Suvarna, Pierson, Elizabeth A., Dunning Hotopp, Julie C., Newton, Irene L. G.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 115 KB

english, 2018

48

Draft Genome Sequences of Isolates from Sediments of the River Elbe That Are Highly Tolerant to Diclofenac

Quesada, José Miguel, Aguilar, Inés, de la Torre, Jesús, Wittich, Regina-Michaela, van Dillewijn, Pieter, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 130 KB

english, 2018

49

Complete Genome Sequence of Rhizobium sp. Strain 11515TR, Isolated from Tomato Rhizosphere in the Philippines

Montecillo, Andrew D., Raymundo, Asuncion K., Papa, Irene A., Aquino, Genevieve Mae B., Rosana, Albert Remus R., Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 130 KB

english, 2018

50

Near-Complete Genome Sequences of Streptomyces sp. Strains AC1-42T and AC1-42W, Isolated from Bat Guano from Cabalyorisa Cave, Mabini, Pangasinan, Philippines

De Leon, Marian P., Park, A-young, Montecillo, Andrew D., Siringan, Maria Auxilia T., Rosana, Albert Remus R., Kim, Song-Gun, Dunning Hotopp, Julie C.

Journal:

Microbiology Resource Announcements

Année:

2018

Langue:

english

Fichier:

PDF, 140 KB

english, 2018